Jantien Oppentocht
Centre for Synthetic Biology
Nijenborgh 4
9747 AG Groningen, The Netherlands j.e.oppentocht[at]rug.nl
Tel: +31 50 363 3941
Fax: +31 50 363 4165
Cooperative Publications
Bartholomäus, A., Fedyunin, I., Feist, P., Sin, C., Zhang G., Valleriani, A. and Ignatova, Z. (2016) Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Phil. Transact., in press
Gorochowski, T.E., Ignatova, Z., Bovenberg, R.A. and Roubos, J.A. (2015) Trade-offs between tRNA abundance and mRNA secondary structure support smoothing of translation elongation rate. Nucl. Acids Res. 43, 3022-32.
Puri, P., Wetzel, C., Saffert, P., Gaston, K.W:, Russell, S.P., van der Vlies, P., Zhang, G., Limbach, P.A., Ignatova, Z., Poolman, B. (2014) Systematic identification of tRNAome and its dynamics in Lactococcus lactis. Mol. Microbiol. 93, 944-956
Healy J, Ekkerman S, Pliotas C, Richard M, Bartlett W, Grayer SC, Morris GM, Miller S, Booth IR, Conway SJ, Rasmussen T. (2014) Understanding the structural requirements for activators of the Kef bacterial potassium efflux system. Biochem. 53, 1982-92
Zhang, G., Fedyunin, I., Valleriani, A., and Ignatova, Z. (2012) FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucl. Acid. Res. 40, e83.
Rasmussen T, Rasmussen A, Singh S, Galbiati H, Edwards MD, Miller S, Booth IR. (2015) Properties of the Mechanosensitive Channel MscS Pore Revealed by Tryptophan Scanning Mutagenesis. Biochem. 54, 4519-30.
Edwards, M.D., Black, S., Rasmussen, T., Rasmussen, A., Stokes, N.R., Stephen, T.L., Miller, S., Booth, I.R. (2012) Characterization of three novel mechanosensitive channel activities in Escherichia coli. Channels (Austin) 6, 272-81.
Ozyamak, E., de Almeida, C., de Moura, A.P.S., Miller, S., & Booth, I.R. (2013). Integrated stress response of Escherichia coli to methylglyoxal: transcriptional readthrough from the nemRA operon enhances protection through increased expression of glyoxalase I. Mol. Microbiol.88, 936-50.
Delgado-SanMartin, J. A., Hare, J. I., de Moura, A. P. S., Yates, J.W. T. (2015). Oxygen-Driven Tumour Growth Model: A Pathology-Relevant Mathematical Approach. PLoS Comp. Biol11, e1004550.