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Publications

  1. Bartholomäus, A., Fedyunin, I., Feist, P., Sin, C., Zhang G., Valleriani, A. and Ignatova, Z. (2016) Bacteria differently regulate mRNA abundance to specifically respond to various stresses. Phil. Transact., in press
    .:Collaborative Publication:.
  2. Valleriani, A. (2015)Circular analysis in complex stochastic systems. Sci. Rep. 5, 17986
  3. Sin, C., Chiarugi, D. Valleriani, A. (2015) Single-molecule modeling of mRNA degradation by miRNA: Lessons from data BMC Systems Biology 9, S2
  4. Rading, M.M., Sandmann, M., Steup, M., Chiarugi, D., Valleriani, A. (2015) Weak correlation of starch and volume in synchronized photosynthetic cells Phys. Rev. E 91, 012711
  5. Li, X., Kolomeisky, A.B., Valleriani, A. (2014) Stochastic kinetics on networks: When slow is fast. J. Phys. Chem B 118, 10419-10425
  6. Li, X., Kolomeisky, A.B., Valleriani, A. (2014) Pathway structure determination in complex stochastic networks with non-exponential dwell times. J. Chem. Phys. 140, 184102
  7. Angelo Valleriani, Xin Li, Anatoly B Kolomeisky Unveiling the hidden structure of complex stochastic biochemical networks Journal of Chemical Physics 140 (2014) 064101
  8. Carlus Deneke, Reinhard Lipowsky, Angelo Valleriani Effect of ribosome shielding on mRNA stability Physical Biology 10 (2013) 046008
  9. Zhang, G., Fedyunin, I., Valleriani, A., and Ignatova, Z. (2012) FANSe: an accurate algorithm for quantitative mapping of large scale sequencing reads. Nucl. Acid. Res. 40, e83.
    .:Collaborative Publication:.
  10. Deneke, C., Lipowsky, R., Valleriani, A. (2013) Complex degradation processes lead to non-exponential decay patterns and age-dependent decay rates of messenger RNA PLoS ONE 8, e55442
  11. Keller, P., Valleriani, A. (2012) Single-molecule stochastic times in a reversible bimolecular reaction J. Chem. Phys. 127, 084106
  12. Deneke, C., Rudorf, S., Valleriani, A. (2012) Transient Phenomena in Gene Expression after Induction of Transcription PLoS ONE 7, e35044
  13. Rusconi, M., Valleriani, A., Dunlop, J.W.C., Kurths, J. (2012) Richard Weinkamer Quantitative approach to the stochastics of bone remodeling EPL 97, 28009