Publications

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  (5) Consejo Superior de Investigaciones Cientificas (CSIC) - Instituto de Investigaciones Marinas

  Prof. Julio Rodriguez Banga
  C/Eduardo Cabello 6 - 36208 Vigo -Spain
  Website - e-mail: julio[at]iim.csic.es
  Fax: +34 (0)986 292 762
  

1. Gábor, A., and Banga, J. R. (2015) Robust and efficient parameter estimation in dynamic models of biological systems. BMC Systems Biol 9, 74.
2. Henriques, D., Rocha, M., Saez-Rodriguez, J., and Banga, J.R. (2015) Reverse engineering of logic-based differential equation models using a mixed-integer dynamic optimisation approach. Binformatics 31, 2999-3007.
3. Gábor, A., Hangos, K.M, Banga, J.R., and Szederkényi, G. (2015) Reaction Network Realizations of Rational Biochemical Systems and Their Structural Properties. J. Math. Chem. 53, 1657-1686.
4. Gábor, A., and Banga, J. R. (2014) Improved Parameter Estimation in Kinetic Models: Selection and Tuning of Regularization Methods. In "Computational Methods in Systems Biology", (Editors: Pedro Mendes, Joseph O. Dada, Kieran Smallbone), Lecture Notes in Computer Science 8859, 45-60.
5. Egea, J.A., Henriques, D., Cokelaer, T., Villaverde, A.F., MacNamara, A., Danciu, D.P., Banga, J.R., and Saez-Rodriguez, J. (2014) MEIGO: an open-source software suite based on metaheuristics for global optimization in systems biology and bioinformatics. BMC Bioinformatics 15, 136.
6. Gábor, A., Hangos, K.M., Szederkényi, G., and Banga J.R. (2013) On the Verification and Correction of Large-Scale Kinetic Models in Systems Biology. Computational Methods in Systems Biology. Lecture Notes in Computer Science 8130, 206-219.
7. Rodriguez-Fernandez, M., Rehberg, M., Kremling, A., and Banga, J.R. (2013) Simultaneous model discrimination and parameter estimation in dynamic models of cellular systems. BMC Systems Biol. 7,76
8. Higuera, C., Villaverde, A.F., Banga, J.R., Ross, J. and Moran, F. (2012) Multi-Criteria Optimization of Regulation in Metabolic Networks. PLoS ONE 7, e41122. 
9. Villaverde, A.F., Egea, J.A., and Banga J.R. (2012) A cooperative strategy for parameter estimation in large scale systems biology models. BMC Systems Biol. 6:75.
10. Vilas, C., Balsa-Canto, E.. Garcia, M.S.G., Banga, J.R., and Alonso, A.A. (2012) Dynamic optimization of distributed biological systems using robust and efficient numerical techniques. BMC Systems Biol. 6:79.
11. Otero-Muras, I., Banga, J.R., and Alonso, A.A. (2012) Characterizing Multistationarity Regimes in Biochemical Reaction Networks. PLoS ONE 7,e39194.
12. Szederkenyi G., Banga, J.R., and Alonso, A.A. (2012) CRNreals: a toolbox fordistinguishability and identifiability analysis of biochemical reaction networks. Bioinformatics 28, 1549-50.
13. Rodriguez-Fernandez, M., Banga, J.R., and Doyle, F.J. (2012) Novel global sensitivity analysis methodology accounting for the crucial role of the distribution of input parameters: application to systems biology models. Int. J. of Robust and Nonlinear Control 22, 1082-102.  
14. Balsa-Canto, E., Banga, J.R., Egea, J.A., Fernandez-Villaverde, A., and de Hijas-Liste, G.M. (2012) Global optimization in systems biology: stochastic methods and their applications. Adv. Exp. Med. Biol. 736, 409-24.